Transcript: ENSMUST00000048688.8 Fbxo38-201

Description

F-box protein 38 [Source:MGI Symbol;Acc:MGI:2444639]

Gene Synonyms

6030410I24Rik, SP329

Location

Chromosome 18: 62,637,226-62,681,766 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 22 domains and features, is associated with 2822 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000042211.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000048688.8	Fbxo38-201	4254	1194aa	ENSMUSP00000047541.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37841	Q8BMI0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235807.2	Fbxo38-202	757	179aa	ENSMUSP00000158310.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB05	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000236904.2	Fbxo38-203	2951	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237378.2	Fbxo38-204	638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 4,254 bps, Translation length: 1,194 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BMI0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37841

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000048688.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000048688.8 Fbxo38-201

Summary

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Transcript: ENSMUST00000048688.8 Fbxo38-201

Summary

About Us

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