Transcript: ENSMUST00000048393.8 Atg101-201

Description

autophagy related 101 [Source:MGI Symbol;Acc:MGI:1915368]

Gene Synonyms

9430023L20Rik

Location

Chromosome 15: 101,182,153-101,188,826 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 753 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037204.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000048393.8	Atg101-201	1270	218aa	ENSMUSP00000045474.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27849	Q9D8Z6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230525.2	Atg101-203	605	113aa	ENSMUSP00000154855.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VJN5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229525.2	Atg101-202	523	84aa	ENSMUSP00000154849.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VH88	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,270 bps, Translation length: 218 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D8Z6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27849

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000048393.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000048393.8 Atg101-201

Summary

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Transcript: ENSMUST00000048393.8 Atg101-201

Summary

About Us

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