Transcript: ENSMUST00000048109.8 2700046A07Rik-201

Description

RIKEN cDNA 2700046A07 gene [Source:MGI Symbol;Acc:MGI:1919803]

Location

Chromosome 18: 62,887,820-62,889,614 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 667 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000041789.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000067450.4	2700046A07Rik-202	2143	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000334179.1	2700046A07Rik-203	2112	No protein	-	lncRNA	-
ENSMUST00000334182.1	2700046A07Rik-206	1990	No protein	-	lncRNA	-
ENSMUST00000334181.1	2700046A07Rik-205	1395	No protein	-	lncRNA	-
ENSMUST00000334180.1	2700046A07Rik-204	1370	No protein	-	lncRNA	-
ENSMUST00000048109.8	2700046A07Rik-201	1046	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000334183.1	2700046A07Rik-207	747	No protein	-	lncRNA	-
ENSMUST00000334184.1	2700046A07Rik-208	603	No protein	-	lncRNA	-
ENSMUST00000334185.1	2700046A07Rik-209	492	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,046 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000048109.8

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana (TAGENE) manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSMUST00000048109.8 2700046A07Rik-201

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Transcript: ENSMUST00000048109.8 2700046A07Rik-201

Summary

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