Transcript: ENSMUST00000045993.16 Cops4-201

Description

COP9 signalosome subunit 4 [Source:MGI Symbol;Acc:MGI:1349414]

Gene Synonyms

COP9 complex S4, D5Ertd774e

Location

Chromosome 5: 100,666,122-100,695,671 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 2028 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035297.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045993.16	Cops4-201	1810	406aa	ENSMUSP00000048416.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19463	O88544 Q14AI7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000406931.1	Cops4-229	1897	387aa	ENSMUSP00000185294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406940.1	Cops4-238	1889	382aa	ENSMUSP00000185303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406941.1	Cops4-239	1797	376aa	ENSMUSP00000185304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406927.1	Cops4-225	1794	404aa	ENSMUSP00000185290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000406926.1	Cops4-224	1777	395aa	ENSMUSP00000185289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406928.1	Cops4-226	1777	395aa	ENSMUSP00000185291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406947.1	Cops4-245	1732	380aa	ENSMUSP00000185310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406911.1	Cops4-209	1725	352aa	ENSMUSP00000185274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406910.1	Cops4-208	1694	313aa	ENSMUSP00000185273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000573699.1	Cops4-251	1639	349aa	ENSMUSP00000352062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406913.1	Cops4-211	1609	339aa	ENSMUSP00000185276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406917.1	Cops4-215	1577	378aa	ENSMUSP00000185280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406948.1	Cops4-246	1510	306aa	ENSMUSP00000185311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406933.1	Cops4-231	1474	294aa	ENSMUSP00000185296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000146476.8	Cops4-205	897	206aa	ENSMUSP00000121979.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z1R9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000151414.8	Cops4-207	826	244aa	ENSMUSP00000114585.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YV99	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000406938.1	Cops4-236	797	50aa	ENSMUSP00000185301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000406942.1	Cops4-240	5561	36aa	ENSMUSP00000185305.1	Nonsense mediated decay		-	-
ENSMUST00000406929.1	Cops4-227	3845	52aa	ENSMUSP00000185292.1	Nonsense mediated decay		-	-
ENSMUST00000406939.1	Cops4-237	1918	36aa	ENSMUSP00000185302.1	Nonsense mediated decay		-	-
ENSMUST00000406944.1	Cops4-242	1911	384aa	ENSMUSP00000185307.1	Nonsense mediated decay		-	-
ENSMUST00000406920.1	Cops4-218	1760	51aa	ENSMUSP00000185283.1	Nonsense mediated decay		-	-
ENSMUST00000406915.1	Cops4-213	1746	36aa	ENSMUSP00000185278.1	Nonsense mediated decay		-	-
ENSMUST00000406912.1	Cops4-210	1737	336aa	ENSMUSP00000185275.1	Nonsense mediated decay		-	-
ENSMUST00000406916.1	Cops4-214	1701	52aa	ENSMUSP00000185279.1	Nonsense mediated decay		-	-
ENSMUST00000406935.1	Cops4-233	1682	35aa	ENSMUSP00000185298.1	Nonsense mediated decay		-	-
ENSMUST00000406914.1	Cops4-212	1670	40aa	ENSMUSP00000185277.1	Nonsense mediated decay		-	-
ENSMUST00000406932.1	Cops4-230	1669	36aa	ENSMUSP00000185295.1	Nonsense mediated decay		-	-
ENSMUST00000406946.1	Cops4-244	1654	36aa	ENSMUSP00000185309.1	Nonsense mediated decay		-	-
ENSMUST00000406918.1	Cops4-216	1647	142aa	ENSMUSP00000185281.1	Nonsense mediated decay		-	-
ENSMUST00000567849.1	Cops4-249	1641	139aa	ENSMUSP00000346212.1	Nonsense mediated decay		-	-
ENSMUST00000406919.1	Cops4-217	1634	248aa	ENSMUSP00000185282.1	Nonsense mediated decay		-	-
ENSMUST00000406922.1	Cops4-220	1629	247aa	ENSMUSP00000185285.1	Nonsense mediated decay		-	-
ENSMUST00000406925.1	Cops4-223	1628	325aa	ENSMUSP00000185288.1	Nonsense mediated decay		-	-
ENSMUST00000406923.1	Cops4-221	1626	38aa	ENSMUSP00000185286.1	Nonsense mediated decay		-	-
ENSMUST00000406930.1	Cops4-228	1614	36aa	ENSMUSP00000185293.1	Nonsense mediated decay		-	-
ENSMUST00000406950.1	Cops4-248	1609	51aa	ENSMUSP00000185313.1	Nonsense mediated decay		-	-
ENSMUST00000406921.1	Cops4-219	1608	133aa	ENSMUSP00000185284.1	Nonsense mediated decay		-	-
ENSMUST00000406936.1	Cops4-234	1601	36aa	ENSMUSP00000185299.1	Nonsense mediated decay		-	-
ENSMUST00000406943.1	Cops4-241	1597	40aa	ENSMUSP00000185306.1	Nonsense mediated decay		-	-
ENSMUST00000406937.1	Cops4-235	1570	40aa	ENSMUSP00000185300.1	Nonsense mediated decay		-	-
ENSMUST00000406949.1	Cops4-247	1563	36aa	ENSMUSP00000185312.1	Nonsense mediated decay		-	-
ENSMUST00000406934.1	Cops4-232	1556	52aa	ENSMUSP00000185297.1	Nonsense mediated decay		-	-
ENSMUST00000406924.1	Cops4-222	1547	40aa	ENSMUSP00000185287.1	Nonsense mediated decay		-	-
ENSMUST00000406945.1	Cops4-243	1503	142aa	ENSMUSP00000185308.1	Nonsense mediated decay		-	-
ENSMUST00000567850.1	Cops4-250	1399	40aa	ENSMUSP00000346213.1	Nonsense mediated decay		-	-
ENSMUST00000123492.8	Cops4-203	872	253aa	ENSMUSP00000119737.2	Nonsense mediated decay		F6QTS1	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000123069.2	Cops4-202	632	36aa	ENSMUSP00000115767.2	Nonsense mediated decay		D6RG47	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000147729.8	Cops4-206	2389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000123559.2	Cops4-204	2154	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,810 bps, Translation length: 406 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88544

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19463

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045993.16

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000045993.16 Cops4-201

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Transcript: ENSMUST00000045993.16 Cops4-201

Summary

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