Transcript: ENSMUST00000045692.9 Fbxl16-201

Description

F-box and leucine-rich repeat protein 16 [Source:MGI Symbol;Acc:MGI:2448488]

Location

Chromosome 17: 26,028,059-26,040,229 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 23 domains and features, is associated with 1020 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025738.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045692.9	Fbxl16-201	3489	479aa	ENSMUSP00000048562.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50036	A2RT62 B2RPY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000236165.2	Fbxl16-203	2757	479aa	ENSMUSP00000157536.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50036	A2RT62 B2RPY3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235694.2	Fbxl16-202	387	122aa	ENSMUSP00000157669.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9I8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 3,489 bps, Translation length: 479 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2RT62

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50036

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000045692.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000045692.9 Fbxl16-201

Summary

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Transcript: ENSMUST00000045692.9 Fbxl16-201

Summary

About Us

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