Transcript: ENSMUST00000043990.14 Edc3-201

Description

enhancer of mRNA decapping 3 [Source:MGI Symbol;Acc:MGI:2142951]

Gene Synonyms

Lsm16, Yjdc

Location

Chromosome 9: 57,615,823-57,659,782 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 20 domains and features, is associated with 1902 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038957.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043990.14	Edc3-201	5708	508aa	ENSMUSP00000049146.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23231	A0ELI5 Q8K2D3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000142807.2	Edc3-203	443	65aa	ENSMUSP00000123505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YYS4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000137245.8	Edc3-202	4277	57aa	ENSMUSP00000123317.2	Nonsense mediated decay		D6RCX6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 5,708 bps, Translation length: 508 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K2D3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23231

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000043990.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000043990.14 Edc3-201

Summary

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Transcript: ENSMUST00000043990.14 Edc3-201

Summary

About Us

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