Transcript: ENSMUST00000043725.9 Cntnap5a-201

Description

contactin associated protein-like 5A [Source:MGI Symbol;Acc:MGI:3643623]

Gene Synonyms

Caspr5-1

Location

About this transcript

This transcript has 24 exons, is annotated with 50 domains and features, is associated with 54671 variant alleles and maps to 250 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043725.9	Cntnap5a-201	10945	1304aa	ENSMUSP00000035732.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35689	Q0V8T9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 10,945 bps, Translation length: 1,304 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0V8T9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35689

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000043725.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.