Transcript: ENSMUST00000043150.6 Acsl5-201

Description

acyl-CoA synthetase long-chain family member 5 [Source:MGI Symbol;Acc:MGI:1919129]

Gene Synonyms

1700030F05Rik, Facl5

Location

Chromosome 19: 55,241,801-55,286,152 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 8 domains and features, is associated with 2657 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024981.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043150.6	Acsl5-201	4243	683aa	ENSMUSP00000046585.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29908	Q3UC67 Q8JZR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225551.2	Acsl5-205	520	117aa	ENSMUSP00000153302.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YD68	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224414.2	Acsl5-203	455	96aa	ENSMUSP00000152972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCG4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000225454.2	Acsl5-204	432	62aa	ENSMUSP00000152956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCF3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000224337.2	Acsl5-202	529	95aa	ENSMUSP00000153474.2	Nonsense mediated decay		A0A286YE29	-
ENSMUST00000226019.2	Acsl5-206	358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 22, Coding exons: 20, Transcript length: 4,243 bps, Translation length: 683 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8JZR0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29908

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000043150.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000043150.6 Acsl5-201

Summary

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Transcript: ENSMUST00000043150.6 Acsl5-201

Summary

About Us

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