Transcript: ENSMUST00000041361.14 Zfp335-201

Description

zinc finger protein 335 [Source:MGI Symbol;Acc:MGI:2682313]

Gene Synonyms

1810045J01Rik

Location

Chromosome 2: 164,733,802-164,753,677 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 75 domains and features, is associated with 1557 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039834.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000041361.14	Zfp335-201	4587	1337aa	ENSMUSP00000038298.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38331	A2A5K6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000183830.8	Zfp335-203	4510	598aa	ENSMUSP00000139133.2	Nonsense mediated decay		Q6P5F4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000139247.2	Zfp335-202	680	91aa	ENSMUSP00000138664.2	Nonsense mediated decay		S4R2J0	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 4,587 bps, Translation length: 1,337 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2A5K6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38331

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000041361.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000041361.14 Zfp335-201

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Transcript: ENSMUST00000041361.14 Zfp335-201

Summary

About Us

Get help

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