Transcript: ENSMUST00000040860.3 Psma8-201

Description

proteasome subunit alpha 8 [Source:MGI Symbol;Acc:MGI:1920927]

Gene Synonyms

2410072D24Rik

Location

Chromosome 18: 14,839,208-14,895,355 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 2696 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000036743.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040860.3	Psma8-201	1692	250aa	ENSMUSP00000042590.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50226	Q9CWH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234680.2	Psma8-204	1023	210aa	ENSMUSP00000157022.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZMS4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234922.2	Psma8-206	1918	63aa	ENSMUSP00000156989.2	Nonsense mediated decay		A0A3Q4EG42	-
ENSMUST00000234869.2	Psma8-205	1214	53aa	ENSMUSP00000157105.2	Nonsense mediated decay		A0A3Q4EHS3	-
ENSMUST00000234177.2	Psma8-202	493	35aa	ENSMUSP00000157309.2	Nonsense mediated decay		A0A3Q4L361	-
ENSMUST00000235037.2	Psma8-207	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234318.2	Psma8-203	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,692 bps, Translation length: 250 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CWH6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50226

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040860.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000040860.3 Psma8-201

Summary

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Transcript: ENSMUST00000040860.3 Psma8-201

Summary

About Us

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