Transcript: ENSMUST00000040772.9 Fermt3-201

Description

fermitin family member 3 [Source:MGI Symbol;Acc:MGI:2147790]

Gene Synonyms

C79673, Kindlin-3

Location

Chromosome 19: 6,976,326-6,996,837 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 26 domains and features, is associated with 1759 variant alleles and maps to 312 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024965.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040772.9	Fermt3-201	2587	665aa	ENSMUSP00000037858.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29518	Q3TEE6 Q8K1B8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236188.2	Fermt3-202	379	93aa	ENSMUSP00000157637.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9F7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237960.2	Fermt3-204	2988	266aa	ENSMUSP00000158556.2	Nonsense mediated decay		A0A494BBJ8	-
ENSMUST00000237888.2	Fermt3-203	2856	530aa	ENSMUSP00000157792.2	Nonsense mediated decay		A0A494B9W3	-
ENSMUST00000238171.2	Fermt3-205	2947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,587 bps, Translation length: 665 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K1B8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29518

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040772.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000040772.9 Fermt3-201

Summary

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Transcript: ENSMUST00000040772.9 Fermt3-201

Summary

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