Transcript: ENSMUST00000040270.6 Actr1a-201

Description

ARP1 actin-related protein 1A, centractin alpha [Source:MGI Symbol;Acc:MGI:1858964]

Location

Chromosome 19: 46,365,250-46,384,186 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 18 domains and features, is associated with 1631 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025228.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040270.6	Actr1a-201	2757	376aa	ENSMUSP00000039844.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29878	P61164	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237742.2	Actr1a-206	2683	332aa	ENSMUSP00000158413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB86	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000235752.2	Actr1a-202	533	52aa	ENSMUSP00000157773.2	Nonsense mediated decay		A0A494B9R6	-
ENSMUST00000237477.2	Actr1a-205	429	42aa	ENSMUSP00000158084.2	Nonsense mediated decay		A0A494BAH0	-
ENSMUST00000236814.2	Actr1a-204	1458	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236117.2	Actr1a-203	1076	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237952.2	Actr1a-207	964	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,757 bps, Translation length: 376 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61164

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29878

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040270.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000040270.6 Actr1a-201

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Transcript: ENSMUST00000040270.6 Actr1a-201

Summary

About Us

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