Transcript: ENSMUST00000039867.10 Zbtb41-201

Description

zinc finger and BTB domain containing 41 [Source:MGI Symbol;Acc:MGI:2444487]

Gene Synonyms

8430415N23Rik, 9830132G07Rik

Location

Chromosome 1: 139,350,120-139,380,743 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 83 domains and features, is associated with 1581 variant alleles and maps to 355 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033964.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000039867.10	Zbtb41-201	8361	908aa	ENSMUSP00000045570.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48385	Q811F1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000200243.5	Zbtb41-203	2127	657aa	ENSMUSP00000142797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0G2JEJ7	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000199011.2	Zbtb41-202	3803	219aa	ENSMUSP00000143768.2	Nonsense mediated decay		A0A0G2JH01	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 8,361 bps, Translation length: 908 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q811F1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48385

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000039867.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000039867.10 Zbtb41-201

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Transcript: ENSMUST00000039867.10 Zbtb41-201

Summary

About Us

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