Transcript: ENSMUST00000038229.5 Neil2-201

Description

nei like 2 (E. coli) [Source:MGI Symbol;Acc:MGI:2686058]

Gene Synonyms

LOC382913, NEH2

Location

Chromosome 14: 63,419,892-63,430,990 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 1102 variant alleles and maps to 99 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035121.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000038229.5	Neil2-201	1932	329aa	ENSMUSP00000045200.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36949	Q6R2P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226002.2	Neil2-205	1037	306aa	ENSMUSP00000152963.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1LZM6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000225157.2	Neil2-203	550	132aa	ENSMUSP00000153633.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDY3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000225841.2	Neil2-204	1109	277aa	ENSMUSP00000153441.2	Nonsense mediated decay		Q1RLK4	-
ENSMUST00000223723.2	Neil2-202	3580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,932 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6R2P8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36949

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000038229.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000038229.5 Neil2-201

Summary

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Transcript: ENSMUST00000038229.5 Neil2-201

Summary

About Us

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