Transcript: ENSMUST00000037011.6 Trim36-201

Description

tripartite motif-containing 36 [Source:MGI Symbol;Acc:MGI:106264]

Gene Synonyms

D18Wsu100e, Haprin

Location

Chromosome 18: 46,298,367-46,345,674 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 32 domains and features, is associated with 3163 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033949.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000037011.6	Trim36-201	4546	729aa	ENSMUSP00000037978.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29229	Q80WG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000167364.9	Trim36-202	2553	717aa	ENSMUSP00000129771.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50279	E9Q3A0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000237526.2	Trim36-203	1191	219aa	ENSMUSP00000157724.2	Nonsense mediated decay		A0A494B9M7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,546 bps, Translation length: 729 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80WG7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29229

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000037011.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000037011.6 Trim36-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000037011.6 Trim36-201

Summary

About Us

Get help

Our sister sites

Follow us