Transcript: ENSMUST00000036450.8 Spg11-201

Description

SPG11, spatacsin vesicle trafficking associated [Source:MGI Symbol;Acc:MGI:2444989]

Gene Synonyms

6030465E24Rik, C530005A01Rik, spastic paraplegia 11

Location

Chromosome 2: 121,884,001-121,948,867 reverse strand.

About this transcript

This transcript has 40 exons, is annotated with 12 domains and features, is associated with 3944 variant alleles and maps to 457 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033396.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000036450.8	Spg11-201	7671	2430aa	ENSMUSP00000037543.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50687	Q3UHA3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000133145.8	Spg11-202	2555	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000135847.2	Spg11-203	1813	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 7,671 bps, Translation length: 2,430 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UHA3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50687

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000036450.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000036450.8 Spg11-201

Summary

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Transcript: ENSMUST00000036450.8 Spg11-201

Summary

About Us

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