Transcript: ENSMUST00000036247.10 C030006K11Rik-201

Description

RIKEN cDNA C030006K11 gene [Source:MGI Symbol;Acc:MGI:1925941]

Location

Chromosome 15: 76,605,665-76,608,040 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 446 variant alleles and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000116138.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000036247.10	C030006K11Rik-201	1754	218aa	ENSMUSP00000039910.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27591	Q8VE95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228990.2	C030006K11Rik-202	2030	143aa	ENSMUSP00000155349.2	Nonsense mediated decay		Q9D1W4	-
ENSMUST00000231059.2	C030006K11Rik-206	1820	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230372.2	C030006K11Rik-204	2364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230559.2	C030006K11Rik-205	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229507.2	C030006K11Rik-203	685	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,754 bps, Translation length: 218 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VE95

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27591

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000036247.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000036247.10 C030006K11Rik-201

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Transcript: ENSMUST00000036247.10 C030006K11Rik-201

Summary

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