Transcript: ENSMUST00000035027.13 Clstn2-201

Description

calsyntenin 2 [Source:MGI Symbol;Acc:MGI:1929897]

Gene Synonyms

2900042C18Rik, CS2, CSTN2, Cst-2

Location

Chromosome 9: 97,326,448-97,915,234 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 28 domains and features, is associated with 28988 variant alleles and maps to 329 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000032452.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000035027.13	Clstn2-201	4365	966aa	ENSMUSP00000035027.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40733	Q9ER65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000162295.2	Clstn2-202	4174	960aa	ENSMUSP00000124081.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9ER65-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,365 bps, Translation length: 966 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ER65

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40733

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000035027.13

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000035027.13 Clstn2-201

Summary

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Transcript: ENSMUST00000035027.13 Clstn2-201

Summary

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