Transcript: ENSMUST00000034796.15 Elovl4-201

Description

ELOVL fatty acid elongase 4 [Source:MGI Symbol;Acc:MGI:1933331]

Gene Synonyms

elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4

Location

Chromosome 9: 83,660,745-83,688,430 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 30 domains and features, is associated with 2369 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000032262.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034796.15	Elovl4-201	3126	312aa	ENSMUSP00000034796.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23376	Q9EQC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000463494.1	Elovl4-203	3045	285aa	ENSMUSP00000241857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000183614.2	Elovl4-202	782	181aa	ENSMUSP00000139163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		V9GXI2	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000463495.1	Elovl4-204	3030	145aa	ENSMUSP00000241858.1	Nonsense mediated decay		-	-
ENSMUST00000463496.1	Elovl4-205	2762	47aa	ENSMUSP00000241859.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,126 bps, Translation length: 312 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9EQC4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23376

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000034796.15

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000034796.15 Elovl4-201

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Transcript: ENSMUST00000034796.15 Elovl4-201

Summary

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