Transcript: ENSMUST00000034463.4 Arv1-201

Description

ARV1 homolog, fatty acid homeostasis modulator [Source:MGI Symbol;Acc:MGI:1916115]

Gene Synonyms

1110067L22Rik

Location

Chromosome 8: 125,448,878-125,460,862 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 1317 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031982.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034463.4	Arv1-201	1165	266aa	ENSMUSP00000034463.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22774	Q0VBH5 Q9D0U9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000212959.2	Arv1-203	937	149aa	ENSMUSP00000148335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1D5RLE6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000212036.2	Arv1-202	891	112aa	ENSMUSP00000148475.2	Nonsense mediated decay		A0A1D5RLR4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,165 bps, Translation length: 266 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D0U9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22774

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000034463.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000034463.4 Arv1-201

Summary

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Transcript: ENSMUST00000034463.4 Arv1-201

Summary

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