Transcript: ENSMUST00000031377.9 Scarb2-201

Description

scavenger receptor class B, member 2 [Source:MGI Symbol;Acc:MGI:1196458]

Gene Synonyms

9330185J12Rik, Cd36l2, LGP85, LIMP II, LIMP-2

Location

Chromosome 5: 92,589,173-92,653,496 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 31 domains and features, is associated with 4312 variant alleles and maps to 330 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000029426.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000031377.9	Scarb2-201	4698	478aa	ENSMUSP00000031377.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19431	O35114	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000513859.1	Scarb2-208	4659	465aa	ENSMUSP00000292222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513854.1	Scarb2-203	4719	208aa	ENSMUSP00000292217.1	Nonsense mediated decay		-	-
ENSMUST00000513855.1	Scarb2-204	4697	395aa	ENSMUSP00000292218.1	Nonsense mediated decay		-	-
ENSMUST00000513856.1	Scarb2-205	4514	61aa	ENSMUSP00000292219.1	Nonsense mediated decay		-	-
ENSMUST00000513860.1	Scarb2-209	2370	386aa	ENSMUSP00000292223.1	Nonsense mediated decay		-	-
ENSMUST00000513858.1	Scarb2-207	2229	466aa	ENSMUSP00000292221.1	Nonsense mediated decay		-	-
ENSMUST00000513857.1	Scarb2-206	2030	416aa	ENSMUSP00000292220.1	Nonsense mediated decay		-	-
ENSMUST00000201253.2	Scarb2-202	2033	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,698 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O35114

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19431

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000031377.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000031377.9 Scarb2-201

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Transcript: ENSMUST00000031377.9 Scarb2-201

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