Transcript: ENSMUST00000030769.7 Psmc2-201

Description

proteasome (prosome, macropain) 26S subunit, ATPase 2 [Source:MGI Symbol;Acc:MGI:109555]

Location

Chromosome 5: 21,990,281-22,008,785 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 15 domains and features, is associated with 1622 variant alleles and maps to 268 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028932.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239497.2	Psmc2-203	1775	475aa	ENSMUSP00000159299.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19108	Q8BVQ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000030769.7	Psmc2-201	1785	433aa	ENSMUSP00000030769.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P46471 Q8BVQ9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000132720.2	Psmc2-202	3466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,785 bps, Translation length: 433 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P46471

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030769.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

upstream ATG [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000030769.7 Psmc2-201

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Transcript: ENSMUST00000030769.7 Psmc2-201

Summary

About Us

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