Transcript: ENSMUST00000030643.4 Extl1-201

Description

exostosin-like glycosyltransferase 1 [Source:MGI Symbol;Acc:MGI:1888742]

Gene Synonyms

D430033M16Rik

Location

Chromosome 4: 134,080,251-134,099,916 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 2170 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028838.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030643.4	Extl1-201	7605	669aa	ENSMUSP00000030643.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18770	Q9JKV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000513295.1	Extl1-229	7596	666aa	ENSMUSP00000291658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000513281.1	Extl1-215	7566	656aa	ENSMUSP00000291644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513288.1	Extl1-222	7518	640aa	ENSMUSP00000291651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513272.1	Extl1-206	7497	633aa	ENSMUSP00000291635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513277.1	Extl1-211	7436	574aa	ENSMUSP00000291640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513274.1	Extl1-208	7660	286aa	ENSMUSP00000291637.1	Nonsense mediated decay		-	-
ENSMUST00000513271.1	Extl1-205	7412	292aa	ENSMUSP00000291634.1	Nonsense mediated decay		-	-
ENSMUST00000513275.1	Extl1-209	7276	292aa	ENSMUSP00000291638.1	Nonsense mediated decay		-	-
ENSMUST00000513273.1	Extl1-207	7227	292aa	ENSMUSP00000291636.1	Nonsense mediated decay		-	-
ENSMUST00000513286.1	Extl1-220	5623	292aa	ENSMUSP00000291649.1	Nonsense mediated decay		-	-
ENSMUST00000513270.1	Extl1-204	5599	669aa	ENSMUSP00000291633.1	Nonsense mediated decay	CCDS18770	-	-
ENSMUST00000513285.1	Extl1-219	4367	286aa	ENSMUSP00000291648.1	Nonsense mediated decay		-	-
ENSMUST00000513284.1	Extl1-218	4230	286aa	ENSMUSP00000291647.1	Nonsense mediated decay		-	-
ENSMUST00000513283.1	Extl1-217	4156	329aa	ENSMUSP00000291646.1	Nonsense mediated decay		-	-
ENSMUST00000513290.1	Extl1-224	4129	509aa	ENSMUSP00000291653.1	Nonsense mediated decay		-	-
ENSMUST00000513291.1	Extl1-225	4118	263aa	ENSMUSP00000291654.1	Nonsense mediated decay		-	-
ENSMUST00000513278.1	Extl1-212	4099	292aa	ENSMUSP00000291641.1	Nonsense mediated decay		-	-
ENSMUST00000513292.1	Extl1-226	4094	292aa	ENSMUSP00000291655.1	Nonsense mediated decay		-	-
ENSMUST00000513299.1	Extl1-233	4070	554aa	ENSMUSP00000291662.1	Nonsense mediated decay		-	-
ENSMUST00000513280.1	Extl1-214	4063	286aa	ENSMUSP00000291643.1	Nonsense mediated decay		-	-
ENSMUST00000513289.1	Extl1-223	4057	415aa	ENSMUSP00000291652.1	Nonsense mediated decay		-	-
ENSMUST00000513287.1	Extl1-221	4033	411aa	ENSMUSP00000291650.1	Nonsense mediated decay		-	-
ENSMUST00000513276.1	Extl1-210	4020	510aa	ENSMUSP00000291639.1	Nonsense mediated decay		-	-
ENSMUST00000513279.1	Extl1-213	3938	292aa	ENSMUSP00000291642.1	Nonsense mediated decay		-	-
ENSMUST00000513297.1	Extl1-231	3924	379aa	ENSMUSP00000291660.1	Nonsense mediated decay		-	-
ENSMUST00000513298.1	Extl1-232	3903	292aa	ENSMUSP00000291661.1	Nonsense mediated decay		-	-
ENSMUST00000513294.1	Extl1-228	3875	292aa	ENSMUSP00000291657.1	Nonsense mediated decay		-	-
ENSMUST00000513282.1	Extl1-216	3869	292aa	ENSMUSP00000291645.1	Nonsense mediated decay		-	-
ENSMUST00000513296.1	Extl1-230	3843	474aa	ENSMUSP00000291659.1	Nonsense mediated decay		-	-
ENSMUST00000513293.1	Extl1-227	3745	292aa	ENSMUSP00000291656.1	Nonsense mediated decay		-	-
ENSMUST00000132387.8	Extl1-202	667	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000142730.2	Extl1-203	396	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 7,605 bps, Translation length: 669 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JKV7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18770

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030643.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000030643.4 Extl1-201

Summary

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Transcript: ENSMUST00000030643.4 Extl1-201

Summary

About Us

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