Transcript: ENSMUST00000029652.5 Pdgfc-201

Description

platelet-derived growth factor, C polypeptide [Source:MGI Symbol;Acc:MGI:1859631]

Gene Synonyms

1110064L01Rik, PDGF-C

Location

Chromosome 3: 80,943,668-81,121,347 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 27 domains and features, is associated with 11852 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028019.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000029652.5	Pdgfc-201	3576	345aa	ENSMUSP00000029652.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17425	Q8CI19	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000557770.1	Pdgfc-210	2682	57aa	ENSMUSP00000336133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000432874.1	Pdgfc-204	3325	57aa	ENSMUSP00000211237.1	Nonsense mediated decay		-	-
ENSMUST00000432876.1	Pdgfc-206	3157	57aa	ENSMUSP00000211239.1	Nonsense mediated decay		-	-
ENSMUST00000557769.1	Pdgfc-209	3135	57aa	ENSMUSP00000336132.1	Nonsense mediated decay		-	-
ENSMUST00000432875.1	Pdgfc-205	3104	129aa	ENSMUSP00000211238.1	Nonsense mediated decay		-	-
ENSMUST00000129285.8	Pdgfc-202	2818	57aa	ENSMUSP00000118970.2	Nonsense mediated decay		D6RGS6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000432878.1	Pdgfc-208	2797	57aa	ENSMUSP00000211241.1	Nonsense mediated decay		-	-
ENSMUST00000432877.1	Pdgfc-207	2564	43aa	ENSMUSP00000211240.1	Nonsense mediated decay		-	-
ENSMUST00000143721.2	Pdgfc-203	2502	57aa	ENSMUSP00000122047.2	Nonsense mediated decay		D6RGS6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,576 bps, Translation length: 345 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CI19

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17425

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029652.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000029652.5 Pdgfc-201

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Transcript: ENSMUST00000029652.5 Pdgfc-201

Summary

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