Advanced notice of Ensembl Tools maintenance
Please note that due to planned maintenance, Ensembl Tools will be unavailable from Tuesday, September 9, at 08:30 AM BST until Wednesday, September 10, at 08:30 AM BST.
Jobs submitted during the maintenance window will be queued and processed once maintenance is complete. We apologise for the inconvenience.

Mouse (GRCm39)
Description

SHOX homeobox 2 [Source:MGI Symbol;Acc:MGI:1201673]

Gene Synonyms

6330543G17Rik, Og12x, Prx3

Location
About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 752 variant alleles and maps to 262 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000029422.14Shox2-2013079331aaENSMUSP00000029422.8
 
Protein coding
CCDS17393P70390-1 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P1TSL:1
ENSMUST00000162098.9Shox2-2032645240aaENSMUSP00000123838.2
 
Protein coding
F6UTR6 TSL:1CDS 5' incomplete
ENSMUST00000162060.9Shox2-2021537190aaENSMUSP00000125031.4
 
Protein coding
CCDS79922A0A140T8S9 GENCODE BasicTSL:3
ENSMUST00000162439.8Shox2-2041081190aaENSMUSP00000124924.4
 
Protein coding
CCDS79922A0A140T8S9 GENCODE BasicTSL:1
ENSMUST00000195261.2Shox2-205414108aaENSMUSP00000141625.2
 
Protein coding
A0A0A6YWN6 TSL:5CDS 3' incomplete
Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,079 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P70390

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17393

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029422.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.