Transcript: ENSMUST00000029087.4 Ogfr-201

Description

opioid growth factor receptor [Source:MGI Symbol;Acc:MGI:1919325]

Gene Synonyms

2010013E17Rik

Location

Chromosome 2: 180,231,038-180,237,629 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 643 variant alleles and maps to 247 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000049401.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000029087.4	Ogfr-201	2449	633aa	ENSMUSP00000029087.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17179	Q99PG2-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000520363.1	Ogfr-205	2438	631aa	ENSMUSP00000298726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000520371.1	Ogfr-213	2382	192aa	ENSMUSP00000298734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000520365.1	Ogfr-207	3985	87aa	ENSMUSP00000298728.1	Nonsense mediated decay		-	-
ENSMUST00000520364.1	Ogfr-206	3611	87aa	ENSMUSP00000298727.1	Nonsense mediated decay		-	-
ENSMUST00000520366.1	Ogfr-208	2986	87aa	ENSMUSP00000298729.1	Nonsense mediated decay		-	-
ENSMUST00000577167.1	Ogfr-218	2972	112aa	ENSMUSP00000355530.1	Nonsense mediated decay		-	-
ENSMUST00000520361.1	Ogfr-203	2821	125aa	ENSMUSP00000298724.1	Nonsense mediated decay		-	-
ENSMUST00000520367.1	Ogfr-209	2787	101aa	ENSMUSP00000298730.1	Nonsense mediated decay		-	-
ENSMUST00000520370.1	Ogfr-212	2777	111aa	ENSMUSP00000298733.1	Nonsense mediated decay		-	-
ENSMUST00000520373.1	Ogfr-215	2772	87aa	ENSMUSP00000298736.1	Nonsense mediated decay		-	-
ENSMUST00000520369.1	Ogfr-211	2740	87aa	ENSMUSP00000298732.1	Nonsense mediated decay		-	-
ENSMUST00000520362.1	Ogfr-204	2687	87aa	ENSMUSP00000298725.1	Nonsense mediated decay		-	-
ENSMUST00000520368.1	Ogfr-210	2374	124aa	ENSMUSP00000298731.1	Nonsense mediated decay		-	-
ENSMUST00000520372.1	Ogfr-214	2293	101aa	ENSMUSP00000298735.1	Nonsense mediated decay		-	-
ENSMUST00000520375.1	Ogfr-217	2269	113aa	ENSMUSP00000298738.1	Nonsense mediated decay		-	-
ENSMUST00000520374.1	Ogfr-216	2237	87aa	ENSMUSP00000298737.1	Nonsense mediated decay		-	-
ENSMUST00000147070.2	Ogfr-202	734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,449 bps, Translation length: 633 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99PG2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17179

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029087.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000029087.4 Ogfr-201

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Transcript: ENSMUST00000029087.4 Ogfr-201

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