Transcript: ENSMUST00000028162.6 Ptges2-201

Description

prostaglandin E synthase 2 [Source:MGI Symbol;Acc:MGI:1917592]

Gene Synonyms

0610038H10Rik, GBF-1, GBF1

Location

Chromosome 2: 32,285,666-32,295,785 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 19 domains and features, is associated with 1147 variant alleles and maps to 562 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026820.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000028162.6	Ptges2-201	5221	384aa	ENSMUSP00000028162.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15914	Q8BWM0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000468326.1	Ptges2-215	5284	405aa	ENSMUSP00000246689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468319.1	Ptges2-208	5215	382aa	ENSMUSP00000246682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000468338.1	Ptges2-227	5103	302aa	ENSMUSP00000246701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468320.1	Ptges2-209	5092	341aa	ENSMUSP00000246683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468323.1	Ptges2-212	5071	334aa	ENSMUSP00000246686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468317.1	Ptges2-206	5023	318aa	ENSMUSP00000246680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468321.1	Ptges2-210	2184	340aa	ENSMUSP00000246684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000468315.1	Ptges2-204	5186	179aa	ENSMUSP00000246678.1	Nonsense mediated decay		-	-
ENSMUST00000468316.1	Ptges2-205	5032	189aa	ENSMUSP00000246679.1	Nonsense mediated decay		-	-
ENSMUST00000468329.1	Ptges2-218	2564	189aa	ENSMUSP00000246692.1	Nonsense mediated decay		-	-
ENSMUST00000468325.1	Ptges2-214	2544	179aa	ENSMUSP00000246688.1	Nonsense mediated decay		-	-
ENSMUST00000468318.1	Ptges2-207	2315	116aa	ENSMUSP00000246681.1	Nonsense mediated decay		-	-
ENSMUST00000468337.1	Ptges2-226	2266	179aa	ENSMUSP00000246700.1	Nonsense mediated decay		-	-
ENSMUST00000468330.1	Ptges2-219	2113	179aa	ENSMUSP00000246693.1	Nonsense mediated decay		-	-
ENSMUST00000557969.1	Ptges2-229	1947	179aa	ENSMUSP00000336332.1	Nonsense mediated decay		-	-
ENSMUST00000468339.1	Ptges2-228	1912	199aa	ENSMUSP00000246702.1	Nonsense mediated decay		-	-
ENSMUST00000468333.1	Ptges2-222	1751	116aa	ENSMUSP00000246696.1	Nonsense mediated decay		-	-
ENSMUST00000468324.1	Ptges2-213	1712	104aa	ENSMUSP00000246687.1	Nonsense mediated decay		-	-
ENSMUST00000468332.1	Ptges2-221	1646	104aa	ENSMUSP00000246695.1	Nonsense mediated decay		-	-
ENSMUST00000468322.1	Ptges2-211	1639	110aa	ENSMUSP00000246685.1	Nonsense mediated decay		-	-
ENSMUST00000468328.1	Ptges2-217	1611	199aa	ENSMUSP00000246691.1	Nonsense mediated decay		-	-
ENSMUST00000468336.1	Ptges2-225	1603	181aa	ENSMUSP00000246699.1	Nonsense mediated decay		-	-
ENSMUST00000468335.1	Ptges2-224	1564	110aa	ENSMUSP00000246698.1	Nonsense mediated decay		-	-
ENSMUST00000468327.1	Ptges2-216	1441	109aa	ENSMUSP00000246690.1	Nonsense mediated decay		-	-
ENSMUST00000468331.1	Ptges2-220	1421	109aa	ENSMUSP00000246694.1	Nonsense mediated decay		-	-
ENSMUST00000468334.1	Ptges2-223	1380	109aa	ENSMUSP00000246697.1	Nonsense mediated decay		-	-
ENSMUST00000123714.4	Ptges2-202	519	54aa	ENSMUSP00000141638.2	Nonsense mediated decay		A0A0A6YWP8	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000130121.3	Ptges2-203	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 5,221 bps, Translation length: 384 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BWM0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15914

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000028162.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000028162.6 Ptges2-201

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Transcript: ENSMUST00000028162.6 Ptges2-201

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