Transcript: ENSMUST00000027232.16 Ptp4a1-218

Description

protein tyrosine phosphatase 4a1 [Source:NCBI gene (formerly Entrezgene);Acc:19243]

Gene Synonyms

C130021B01, Prl-1

Location

Chromosome 1: 30,979,383-30,988,836 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 1059 variant alleles and maps to 678 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000144322.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027232.16	Ptp4a1-218	4130	173aa	ENSMUSP00000027232.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14858	B9EKL6 Q63739	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233506.3	Ptp4a1-220	4529	44aa	ENSMUSP00000156424.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W3H6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000076587.7	Ptp4a1-219	3248	43aa	ENSMUSP00000110861.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3F2YNM1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 4,130 bps, Translation length: 173 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q63739

CCDS

This transcript is a member of the Mouse CCDS set: CCDS14858

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000027232.16

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000027232.16 Ptp4a1-218

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000027232.16 Ptp4a1-218

Summary

About Us

Get help

Our sister sites

Follow us