Transcript: ENSMUST00000026217.12 Chuk-201

Description

conserved helix-loop-helix ubiquitous kinase [Source:MGI Symbol;Acc:MGI:99484]

Gene Synonyms

Chuk1, IKK 1, IKK alpha, IKK-1, IKK-alpha, IKK1, IKK[a], IKKalpha, IkappaB kinase alpha

Location

Chromosome 19: 44,061,774-44,095,926 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 19 domains and features, is associated with 2096 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025199.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000026217.12	Chuk-201	3509	745aa	ENSMUSP00000026217.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29843	E9QNL4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000507952.1	Chuk-211	3507	724aa	ENSMUSP00000286315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507960.1	Chuk-219	3500	737aa	ENSMUSP00000286323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000119591.3	Chuk-202	3491	719aa	ENSMUSP00000113809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50444	E9Q605	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000565552.1	Chuk-241	3458	712aa	ENSMUSP00000343915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507955.1	Chuk-214	3375	680aa	ENSMUSP00000286318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507970.1	Chuk-229	3314	680aa	ENSMUSP00000286333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507962.1	Chuk-221	3173	615aa	ENSMUSP00000286325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507958.1	Chuk-217	3068	598aa	ENSMUSP00000286321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507953.1	Chuk-212	3951	87aa	ENSMUSP00000286316.1	Nonsense mediated decay		-	-
ENSMUST00000507978.1	Chuk-237	3861	110aa	ENSMUSP00000286341.1	Nonsense mediated decay		-	-
ENSMUST00000507956.1	Chuk-215	3797	582aa	ENSMUSP00000286319.1	Nonsense mediated decay		-	-
ENSMUST00000507965.1	Chuk-224	3767	429aa	ENSMUSP00000286328.1	Nonsense mediated decay		-	-
ENSMUST00000507974.1	Chuk-233	3762	578aa	ENSMUSP00000286337.1	Nonsense mediated decay		-	-
ENSMUST00000507968.1	Chuk-227	3759	400aa	ENSMUSP00000286331.1	Nonsense mediated decay		-	-
ENSMUST00000565554.1	Chuk-243	3718	578aa	ENSMUSP00000343917.1	Nonsense mediated decay		-	-
ENSMUST00000507963.1	Chuk-222	3639	471aa	ENSMUSP00000286326.1	Nonsense mediated decay		-	-
ENSMUST00000507967.1	Chuk-226	3603	110aa	ENSMUSP00000286330.1	Nonsense mediated decay		-	-
ENSMUST00000507975.1	Chuk-234	3578	589aa	ENSMUSP00000286338.1	Nonsense mediated decay		-	-
ENSMUST00000507979.1	Chuk-238	3569	429aa	ENSMUSP00000286342.1	Nonsense mediated decay		-	-
ENSMUST00000507972.1	Chuk-231	3553	64aa	ENSMUSP00000286335.1	Nonsense mediated decay		-	-
ENSMUST00000507957.1	Chuk-216	3514	622aa	ENSMUSP00000286320.1	Nonsense mediated decay		-	-
ENSMUST00000507964.1	Chuk-223	3479	378aa	ENSMUSP00000286327.1	Nonsense mediated decay		-	-
ENSMUST00000565551.1	Chuk-240	3479	699aa	ENSMUSP00000343914.1	Nonsense mediated decay		-	-
ENSMUST00000507961.1	Chuk-220	3473	661aa	ENSMUSP00000286324.1	Nonsense mediated decay		-	-
ENSMUST00000507969.1	Chuk-228	3462	695aa	ENSMUSP00000286332.1	Nonsense mediated decay		-	-
ENSMUST00000565555.1	Chuk-244	3460	167aa	ENSMUSP00000343918.1	Nonsense mediated decay		-	-
ENSMUST00000565553.1	Chuk-242	3446	661aa	ENSMUSP00000343916.1	Nonsense mediated decay		-	-
ENSMUST00000507980.1	Chuk-239	3438	378aa	ENSMUSP00000286343.1	Nonsense mediated decay		-	-
ENSMUST00000507973.1	Chuk-232	3433	51aa	ENSMUSP00000286336.1	Nonsense mediated decay		-	-
ENSMUST00000507959.1	Chuk-218	3407	45aa	ENSMUSP00000286322.1	Nonsense mediated decay		-	-
ENSMUST00000507954.1	Chuk-213	3396	528aa	ENSMUSP00000286317.1	Nonsense mediated decay		-	-
ENSMUST00000507951.1	Chuk-210	3363	471aa	ENSMUSP00000286314.1	Nonsense mediated decay		-	-
ENSMUST00000507966.1	Chuk-225	3324	471aa	ENSMUSP00000286329.1	Nonsense mediated decay		-	-
ENSMUST00000507977.1	Chuk-236	3322	266aa	ENSMUSP00000286340.1	Nonsense mediated decay		-	-
ENSMUST00000507950.1	Chuk-209	3237	51aa	ENSMUSP00000286313.1	Nonsense mediated decay		-	-
ENSMUST00000507971.1	Chuk-230	3186	51aa	ENSMUSP00000286334.1	Nonsense mediated decay		-	-
ENSMUST00000507976.1	Chuk-235	3035	51aa	ENSMUSP00000286339.1	Nonsense mediated decay		-	-
ENSMUST00000147423.8	Chuk-207	2337	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000134495.8	Chuk-204	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000123806.8	Chuk-203	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000146861.2	Chuk-206	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000149091.2	Chuk-208	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000144286.2	Chuk-205	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,509 bps, Translation length: 745 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29843

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000026217.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000026217.12 Chuk-201

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Transcript: ENSMUST00000026217.12 Chuk-201

Summary

About Us

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