Transcript: ENSMUST00000025411.9 Prelid3a-201

Description

PRELI domain containing 3A [Source:MGI Symbol;Acc:MGI:2442865]

Gene Synonyms

A230074A19Rik, Slmo1

Location

Chromosome 18: 67,597,936-67,612,905 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 1536 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024530.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000235414.2	Prelid3a-202	753	215aa	ENSMUSP00000157593.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000025411.9	Prelid3a-201	1404	172aa	ENSMUSP00000025411.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37848	Q8VE85	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237312.2	Prelid3a-204	1941	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235492.2	Prelid3a-203	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,404 bps, Translation length: 172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VE85

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37848

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025411.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000025411.9 Prelid3a-201

Summary

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Transcript: ENSMUST00000025411.9 Prelid3a-201

Summary

About Us

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