Transcript: ENSMUST00000025354.5 Pggt1b-201

Description

protein geranylgeranyltransferase type I, beta subunit [Source:MGI Symbol;Acc:MGI:1917514]

Gene Synonyms

2010207C17Rik, BGG1, GGT1

Location

Chromosome 18: 46,373,672-46,413,897 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 2757 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024477.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000236216.3	Pggt1b-205	8310	377aa	ENSMUSP00000158214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29230	Q8BUY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000422821.1	Pggt1b-215	8424	415aa	ENSMUSP00000201184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422824.1	Pggt1b-218	8307	376aa	ENSMUSP00000201187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000549921.1	Pggt1b-227	8259	360aa	ENSMUSP00000328284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422829.1	Pggt1b-223	8201	307aa	ENSMUSP00000201192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422827.1	Pggt1b-221	8016	279aa	ENSMUSP00000201190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422818.1	Pggt1b-212	7397	326aa	ENSMUSP00000201181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236999.2	Pggt1b-208	903	300aa	ENSMUSP00000157885.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA07	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000571812.1	Pggt1b-230	900	99aa	ENSMUSP00000350175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000549923.1	Pggt1b-229	821	129aa	ENSMUSP00000328286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422831.1	Pggt1b-225	803	122aa	ENSMUSP00000201194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236368.2	Pggt1b-206	547	107aa	ENSMUSP00000158221.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAX1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000422832.1	Pggt1b-226	540	98aa	ENSMUSP00000201195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000422817.1	Pggt1b-211	7191	138aa	ENSMUSP00000201180.1	Nonsense mediated decay		-	-
ENSMUST00000422819.1	Pggt1b-213	6063	47aa	ENSMUSP00000201182.1	Nonsense mediated decay		-	-
ENSMUST00000422826.1	Pggt1b-220	5339	47aa	ENSMUSP00000201189.1	Nonsense mediated decay		-	-
ENSMUST00000422825.1	Pggt1b-219	5292	92aa	ENSMUSP00000201188.1	Nonsense mediated decay		-	-
ENSMUST00000422820.1	Pggt1b-214	5228	220aa	ENSMUSP00000201183.1	Nonsense mediated decay		-	-
ENSMUST00000422822.1	Pggt1b-216	5219	138aa	ENSMUSP00000201185.1	Nonsense mediated decay		-	-
ENSMUST00000549922.1	Pggt1b-228	5082	114aa	ENSMUSP00000328285.1	Nonsense mediated decay		-	-
ENSMUST00000422823.1	Pggt1b-217	4942	227aa	ENSMUSP00000201186.1	Nonsense mediated decay		-	-
ENSMUST00000422828.1	Pggt1b-222	3771	216aa	ENSMUSP00000201191.1	Nonsense mediated decay		-	-
ENSMUST00000422816.1	Pggt1b-210	2600	356aa	ENSMUSP00000201179.1	Nonsense mediated decay		-	-
ENSMUST00000422830.1	Pggt1b-224	2173	100aa	ENSMUSP00000201193.1	Nonsense mediated decay		-	-
ENSMUST00000025354.5	Pggt1b-201	1941	97aa	ENSMUSP00000025354.5	Nonsense mediated decay		A0A498WFM6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235465.2	Pggt1b-202	1278	138aa	ENSMUSP00000158351.2	Nonsense mediated decay		A0A494BB85	-
ENSMUST00000235979.2	Pggt1b-203	2439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237757.2	Pggt1b-209	1845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236205.2	Pggt1b-204	1039	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236527.2	Pggt1b-207	524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,941 bps, Translation length: 97 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025354.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

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Transcript: ENSMUST00000025354.5 Pggt1b-201

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Transcript: ENSMUST00000025354.5 Pggt1b-201

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