Transcript: ENSMUST00000025217.12 Hspa9-201

Description

heat shock protein 9 [Source:MGI Symbol;Acc:MGI:96245]

Gene Synonyms

C3H-specific antigen, CSA, GRP75, Hsc74, Hsp74, Hsp74a, Hspa9a, PBP74, mortalin, mot-2, mthsp70

Location

Chromosome 18: 35,070,467-35,087,750 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 42 domains and features, is associated with 1318 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024359.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025217.12	Hspa9-201	3389	679aa	ENSMUSP00000025217.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29138	P38647	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000420764.1	Hspa9-228	3379	689aa	ENSMUSP00000199127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420751.1	Hspa9-215	3373	676aa	ENSMUSP00000199114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420754.1	Hspa9-218	3332	663aa	ENSMUSP00000199117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420746.1	Hspa9-210	3239	630aa	ENSMUSP00000199109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000551204.1	Hspa9-232	3195	654aa	ENSMUSP00000329567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420761.1	Hspa9-225	3176	697aa	ENSMUSP00000199124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420757.1	Hspa9-221	3160	676aa	ENSMUSP00000199120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420744.1	Hspa9-208	3157	675aa	ENSMUSP00000199107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000551205.1	Hspa9-233	3143	670aa	ENSMUSP00000329568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420762.1	Hspa9-226	3105	658aa	ENSMUSP00000199125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420763.1	Hspa9-227	3076	648aa	ENSMUSP00000199126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420756.1	Hspa9-220	3060	642aa	ENSMUSP00000199119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420760.1	Hspa9-224	2863	577aa	ENSMUSP00000199123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000551201.1	Hspa9-229	2355	410aa	ENSMUSP00000329564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420749.1	Hspa9-213	3419	54aa	ENSMUSP00000199112.1	Nonsense mediated decay		-	-
ENSMUST00000420742.1	Hspa9-206	3260	296aa	ENSMUSP00000199105.1	Nonsense mediated decay		-	-
ENSMUST00000420743.1	Hspa9-207	3168	547aa	ENSMUSP00000199106.1	Nonsense mediated decay		-	-
ENSMUST00000420745.1	Hspa9-209	3074	56aa	ENSMUSP00000199108.1	Nonsense mediated decay		-	-
ENSMUST00000420750.1	Hspa9-214	3059	481aa	ENSMUSP00000199113.1	Nonsense mediated decay		-	-
ENSMUST00000420748.1	Hspa9-212	3051	169aa	ENSMUSP00000199111.1	Nonsense mediated decay		-	-
ENSMUST00000420752.1	Hspa9-216	3017	540aa	ENSMUSP00000199115.1	Nonsense mediated decay		-	-
ENSMUST00000420747.1	Hspa9-211	3002	151aa	ENSMUSP00000199110.1	Nonsense mediated decay		-	-
ENSMUST00000420753.1	Hspa9-217	2977	152aa	ENSMUSP00000199116.1	Nonsense mediated decay		-	-
ENSMUST00000420755.1	Hspa9-219	2929	141aa	ENSMUSP00000199118.1	Nonsense mediated decay		-	-
ENSMUST00000420759.1	Hspa9-223	2851	152aa	ENSMUSP00000199122.1	Nonsense mediated decay		-	-
ENSMUST00000551202.1	Hspa9-230	2842	239aa	ENSMUSP00000329565.1	Nonsense mediated decay		-	-
ENSMUST00000551203.1	Hspa9-231	2799	243aa	ENSMUSP00000329566.1	Nonsense mediated decay		-	-
ENSMUST00000420758.1	Hspa9-222	2760	38aa	ENSMUSP00000199121.1	Nonsense mediated decay		-	-
ENSMUST00000236908.2	Hspa9-203	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237399.2	Hspa9-205	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235244.2	Hspa9-202	504	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237289.2	Hspa9-204	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,389 bps, Translation length: 679 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P38647

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29138

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025217.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000025217.12 Hspa9-201

Summary

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Transcript: ENSMUST00000025217.12 Hspa9-201

Summary

About Us

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