Transcript: ENSMUST00000025208.7 Dnajc18-201

Description

DnaJ heat shock protein family (Hsp40) member C18 [Source:MGI Symbol;Acc:MGI:1923844]

Gene Synonyms

2700075B01Rik

Location

Chromosome 18: 35,804,156-35,836,174 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 19 domains and features, is associated with 2275 variant alleles and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024350.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025208.7	Dnajc18-201	5146	357aa	ENSMUSP00000025208.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29148	Q9CZJ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237995.2	Dnajc18-204	909	163aa	ENSMUSP00000158370.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB56	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000236738.2	Dnajc18-203	582	34aa	ENSMUSP00000157688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9N3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235930.2	Dnajc18-202	569	68aa	ENSMUSP00000157528.2	Nonsense mediated decay		A0A494B9B4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 5,146 bps, Translation length: 357 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CZJ9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29148

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025208.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000025208.7 Dnajc18-201

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Transcript: ENSMUST00000025208.7 Dnajc18-201

Summary

About Us

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