Transcript: ENSMUST00000024727.11 Cdc5l-201

Description

cell division cycle 5-like [Source:MGI Symbol;Acc:MGI:1918952]

Gene Synonyms

1200002I02Rik, PCDC5RP

Location

Chromosome 17: 45,702,809-45,744,671 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 32 domains and features, is associated with 2711 variant alleles and maps to 658 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023932.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024727.11	Cdc5l-201	3036	802aa	ENSMUSP00000024727.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37627	Q3UCF2 Q6A068	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000523383.1	Cdc5l-205	2838	736aa	ENSMUSP00000301746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000582935.1	Cdc5l-212	990	120aa	ENSMUSP00000361300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000523384.1	Cdc5l-206	4048	162aa	ENSMUSP00000301747.1	Nonsense mediated decay		-	-
ENSMUST00000523382.1	Cdc5l-204	3500	253aa	ENSMUSP00000301745.1	Nonsense mediated decay		-	-
ENSMUST00000551566.1	Cdc5l-210	3481	415aa	ENSMUSP00000329929.1	Nonsense mediated decay		Q05DT4	-
ENSMUST00000523385.1	Cdc5l-207	3017	57aa	ENSMUSP00000301748.1	Nonsense mediated decay		-	-
ENSMUST00000551564.1	Cdc5l-209	2857	418aa	ENSMUSP00000329927.1	Nonsense mediated decay		-	-
ENSMUST00000551561.1	Cdc5l-208	2843	370aa	ENSMUSP00000329925.1	Nonsense mediated decay		-	-
ENSMUST00000551567.1	Cdc5l-211	2785	557aa	ENSMUSP00000329930.1	Nonsense mediated decay		-	-
ENSMUST00000232900.2	Cdc5l-202	764	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000232910.2	Cdc5l-203	418	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,036 bps, Translation length: 802 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6A068

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37627

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000024727.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000024727.11 Cdc5l-201

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Transcript: ENSMUST00000024727.11 Cdc5l-201

Summary

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