Transcript: ENSMUST00000024595.5 Slc22a3-201

Description

solute carrier family 22 (organic cation transporter), member 3 [Source:MGI Symbol;Acc:MGI:1333817]

Gene Synonyms

EMT, Oct3, Orct3

Location

Chromosome 17: 12,638,856-12,726,614 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 47 domains and features, is associated with 4852 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023828.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024595.5	Slc22a3-201	3527	551aa	ENSMUSP00000024595.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28391	Q547K2 Q9WTW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000584877.1	Slc22a3-204	2981	369aa	ENSMUSP00000363242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000491545.1	Slc22a3-203	1694	139aa	ENSMUSP00000269908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233535.2	Slc22a3-202	4127	363aa	ENSMUSP00000156407.2	Nonsense mediated decay		A0A3B2W7B3	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,527 bps, Translation length: 551 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WTW5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28391

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000024595.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000024595.5 Slc22a3-201

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Transcript: ENSMUST00000024595.5 Slc22a3-201

Summary

About Us

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