Transcript: ENSMUST00000022590.5 Dnajc15-201

Description

DnaJ heat shock protein family (Hsp40) member C15 [Source:MGI Symbol;Acc:MGI:1913398]

Gene Synonyms

1110003P16Rik, Dnajd1, MCJ

Location

Chromosome 14: 78,063,787-78,112,565 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 2593 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022013.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226459.3	Dnajc15-202	6507	149aa	ENSMUSP00000154390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27292	Q78YY6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3,
ENSMUST00000507989.1	Dnajc15-209	6381	107aa	ENSMUSP00000286352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507991.1	Dnajc15-211	6359	81aa	ENSMUSP00000286354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507996.1	Dnajc15-216	6233	39aa	ENSMUSP00000286359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507985.1	Dnajc15-205	3997	84aa	ENSMUSP00000286348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000579826.1	Dnajc15-225	1496	128aa	ENSMUSP00000358189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507993.1	Dnajc15-213	1485	143aa	ENSMUSP00000286356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000508000.1	Dnajc15-220	1107	35aa	ENSMUSP00000286363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507997.1	Dnajc15-217	869	108aa	ENSMUSP00000286360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000579824.1	Dnajc15-223	807	106aa	ENSMUSP00000358187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000584339.1	Dnajc15-226	672	42aa	ENSMUSP00000362704.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000508001.1	Dnajc15-221	656	64aa	ENSMUSP00000286364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000507984.1	Dnajc15-204	6284	38aa	ENSMUSP00000286347.1	Nonsense mediated decay		-	-
ENSMUST00000507988.1	Dnajc15-208	2874	66aa	ENSMUSP00000286351.1	Nonsense mediated decay		-	-
ENSMUST00000507992.1	Dnajc15-212	2870	64aa	ENSMUSP00000286355.1	Nonsense mediated decay		-	-
ENSMUST00000507987.1	Dnajc15-207	2825	76aa	ENSMUSP00000286350.1	Nonsense mediated decay		-	-
ENSMUST00000507990.1	Dnajc15-210	2817	81aa	ENSMUSP00000286353.1	Nonsense mediated decay		-	-
ENSMUST00000507986.1	Dnajc15-206	2743	44aa	ENSMUSP00000286349.1	Nonsense mediated decay		-	-
ENSMUST00000560721.1	Dnajc15-222	1153	80aa	ENSMUSP00000339084.1	Nonsense mediated decay		-	-
ENSMUST00000584341.1	Dnajc15-228	874	38aa	ENSMUSP00000362706.1	Nonsense mediated decay		-	-
ENSMUST00000507994.1	Dnajc15-214	770	64aa	ENSMUSP00000286357.1	Nonsense mediated decay		-	-
ENSMUST00000507999.1	Dnajc15-219	742	71aa	ENSMUSP00000286362.1	Nonsense mediated decay		-	-
ENSMUST00000507995.1	Dnajc15-215	713	79aa	ENSMUSP00000286358.1	Nonsense mediated decay		-	-
ENSMUST00000022590.5	Dnajc15-201	674	44aa	ENSMUSP00000022590.5	Nonsense mediated decay		A0A2K6EDK0	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000579825.1	Dnajc15-224	669	53aa	ENSMUSP00000358188.1	Nonsense mediated decay		-	-
ENSMUST00000507998.1	Dnajc15-218	627	79aa	ENSMUSP00000286361.1	Nonsense mediated decay		-	-
ENSMUST00000584340.1	Dnajc15-227	501	37aa	ENSMUSP00000362705.1	Nonsense mediated decay		-	-
ENSMUST00000227249.2	Dnajc15-203	419	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 674 bps, Translation length: 44 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022590.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSMUST00000022590.5 Dnajc15-201

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Transcript: ENSMUST00000022590.5 Dnajc15-201

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