Transcript: ENSMUST00000020022.8 Smpdl3a-201

Description

sphingomyelin phosphodiesterase, acid-like 3A [Source:MGI Symbol;Acc:MGI:1931437]

Gene Synonyms

0610010C24Rik, ASM3A, ASML3A

Location

Chromosome 10: 57,670,470-57,687,926 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 1107 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000019872.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000020022.8	Smpdl3a-201	1961	445aa	ENSMUSP00000020022.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23857	P70158	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000151623.8	Smpdl3a-203	376	104aa	ENSMUSP00000122041.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z1B4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000125076.2	Smpdl3a-202	849	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,961 bps, Translation length: 445 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P70158

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23857

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000020022.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000020022.8 Smpdl3a-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000020022.8 Smpdl3a-201

Summary

About Us

Get help

Our sister sites

Follow us