Transcript: ENSMUST00000019572.9 Zfp874b-201

Description

zinc finger protein 874b [Source:MGI Symbol;Acc:MGI:3040702]

Gene Synonyms

9630025I21Rik

Location

Chromosome 13: 67,619,632-67,632,344 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 70 domains and features, is associated with 1425 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000059839.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000019572.9	Zfp874b-201	3744	447aa	ENSMUSP00000019572.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49302	Q7M6X2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000223868.2	Zfp874b-203	596	176aa	ENSMUSP00000153242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDG9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000223711.2	Zfp874b-202	1034	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225027.2	Zfp874b-205	454	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224308.2	Zfp874b-204	421	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,744 bps, Translation length: 447 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49302

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000019572.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000019572.9 Zfp874b-201

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Transcript: ENSMUST00000019572.9 Zfp874b-201

Summary

About Us

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