Transcript: ENSMUST00000019064.10 Cxcl16-201

Description

C-X-C motif chemokine ligand 16 [Source:MGI Symbol;Acc:MGI:1932682]

Gene Synonyms

0910001K24Rik, SR-PSOX, SR-PSOX/CXCL16, Scavenger Receptor

Location

Chromosome 11: 70,344,517-70,350,810 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 784 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000018920.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000019064.10	Cxcl16-201	2991	246aa	ENSMUSP00000019064.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24948	A2CFE9 Q8BSU2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000411615.1	Cxcl16-204	4185	65aa	ENSMUSP00000189978.1	Nonsense mediated decay		-	-
ENSMUST00000548173.1	Cxcl16-206	2443	119aa	ENSMUSP00000326536.1	Nonsense mediated decay		D9YM45	-
ENSMUST00000411616.1	Cxcl16-205	2141	60aa	ENSMUSP00000189979.1	Nonsense mediated decay		-	-
ENSMUST00000126391.2	Cxcl16-202	1267	233aa	ENSMUSP00000133513.2	Nonsense mediated decay		I7HIQ2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000154475.2	Cxcl16-203	1662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,991 bps, Translation length: 246 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BSU2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24948

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000019064.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000019064.10 Cxcl16-201

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Transcript: ENSMUST00000019064.10 Cxcl16-201

Summary

About Us

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