Transcript: ENSMUST00000007482.8 Mrpl49-201

Description

mitochondrial ribosomal protein L49 [Source:MGI Symbol;Acc:MGI:108180]

Gene Synonyms

4833419D18Rik, Nof1

Location

Chromosome 19: 6,103,652-6,107,815 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 781 variant alleles and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000007338.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000007482.8	Mrpl49-201	1764	166aa	ENSMUSP00000007482.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29488	Q9CQ40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235520.2	Mrpl49-202	1311	56aa	ENSMUSP00000157535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B993	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000236412.2	Mrpl49-203	421	115aa	ENSMUSP00000157635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9G1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236833.2	Mrpl49-204	146	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,764 bps, Translation length: 166 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CQ40

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29488

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000007482.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000007482.8 Mrpl49-201

Summary

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Transcript: ENSMUST00000007482.8 Mrpl49-201

Summary

About Us

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