Transcript: ENSMUST00000007046.9 Tmco6-201

Description

transmembrane and coiled-coil domains 6 [Source:MGI Symbol;Acc:MGI:1919233]

Gene Synonyms

2410015B03Rik

Location

Chromosome 18: 36,868,121-36,875,450 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 17 domains and features, is associated with 1002 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000006850.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000007046.9	Tmco6-201	1823	494aa	ENSMUSP00000007046.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37772	Q8BQX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237870.2	Tmco6-206	992	74aa	ENSMUSP00000158109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAJ1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000237727.2	Tmco6-205	1736	128aa	ENSMUSP00000157431.2	Nonsense mediated decay		Q8BQX5-2	-
ENSMUST00000237559.2	Tmco6-204	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237079.2	Tmco6-202	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237255.2	Tmco6-203	613	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,823 bps, Translation length: 494 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BQX5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37772

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000007046.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000007046.9 Tmco6-201

Summary

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Transcript: ENSMUST00000007046.9 Tmco6-201

Summary

About Us

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