Transcript: ENSMUST00000005952.11 Slc30a4-201

Description

solute carrier family 30 (zinc transporter), member 4 [Source:MGI Symbol;Acc:MGI:1345282]

Gene Synonyms

Znt4

Location

Chromosome 2: 122,523,153-122,544,559 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 29 domains and features, is associated with 1336 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000005802.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000005952.11	Slc30a4-201	5458	430aa	ENSMUSP00000005952.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16667	O35149	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000099457.4	Slc30a4-202	3170	381aa	ENSMUSP00000097056.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71131	A2AK40	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 5,458 bps, Translation length: 430 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O35149

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16667

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000005952.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000005952.11 Slc30a4-201

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Transcript: ENSMUST00000005952.11 Slc30a4-201

Summary

About Us

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