Transcript: ENSMUST00000003550.11 Ncstn-201

Description

nicastrin [Source:MGI Symbol;Acc:MGI:1891700]

Gene Synonyms

9430068N19Rik, D1Dau13e, Nct, nicastrin

Location

Chromosome 1: 171,893,580-171,910,362 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 1314 variant alleles and maps to 258 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000003458.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000003550.11	Ncstn-201	2901	708aa	ENSMUSP00000003550.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15507	P57716	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000464469.1	Ncstn-222	2740	657aa	ENSMUSP00000242832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000464467.1	Ncstn-220	2725	688aa	ENSMUSP00000242830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000464471.1	Ncstn-224	2647	626aa	ENSMUSP00000242834.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000464473.1	Ncstn-226	4048	208aa	ENSMUSP00000242836.1	Nonsense mediated decay		-	-
ENSMUST00000464464.1	Ncstn-217	3992	496aa	ENSMUSP00000242827.1	Nonsense mediated decay		-	-
ENSMUST00000464477.1	Ncstn-230	3682	496aa	ENSMUSP00000242840.1	Nonsense mediated decay		-	-
ENSMUST00000559993.1	Ncstn-233	3681	496aa	ENSMUSP00000338356.1	Nonsense mediated decay		-	-
ENSMUST00000464459.1	Ncstn-212	3118	336aa	ENSMUSP00000242822.1	Nonsense mediated decay		-	-
ENSMUST00000464476.1	Ncstn-229	3036	62aa	ENSMUSP00000242839.1	Nonsense mediated decay		-	-
ENSMUST00000464455.1	Ncstn-208	3033	208aa	ENSMUSP00000242818.1	Nonsense mediated decay		-	-
ENSMUST00000464456.1	Ncstn-209	3022	62aa	ENSMUSP00000242819.1	Nonsense mediated decay		-	-
ENSMUST00000140643.8	Ncstn-204	3016	62aa	ENSMUSP00000119128.2	Nonsense mediated decay		D6RCJ2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000464468.1	Ncstn-221	3012	373aa	ENSMUSP00000242831.1	Nonsense mediated decay		-	-
ENSMUST00000464463.1	Ncstn-216	3009	208aa	ENSMUSP00000242826.1	Nonsense mediated decay		-	-
ENSMUST00000464474.1	Ncstn-227	2960	496aa	ENSMUSP00000242837.1	Nonsense mediated decay		-	-
ENSMUST00000464465.1	Ncstn-218	2956	130aa	ENSMUSP00000242828.1	Nonsense mediated decay		-	-
ENSMUST00000464454.1	Ncstn-207	2917	602aa	ENSMUSP00000242817.1	Nonsense mediated decay		-	-
ENSMUST00000464470.1	Ncstn-223	2906	62aa	ENSMUSP00000242833.1	Nonsense mediated decay		-	-
ENSMUST00000464462.1	Ncstn-215	2903	257aa	ENSMUSP00000242825.1	Nonsense mediated decay		-	-
ENSMUST00000464457.1	Ncstn-210	2895	114aa	ENSMUSP00000242820.1	Nonsense mediated decay		-	-
ENSMUST00000464458.1	Ncstn-211	2889	570aa	ENSMUSP00000242821.1	Nonsense mediated decay		-	-
ENSMUST00000464461.1	Ncstn-214	2876	369aa	ENSMUSP00000242824.1	Nonsense mediated decay		-	-
ENSMUST00000464460.1	Ncstn-213	2870	336aa	ENSMUSP00000242823.1	Nonsense mediated decay		-	-
ENSMUST00000559992.1	Ncstn-232	2848	560aa	ENSMUSP00000338355.1	Nonsense mediated decay		-	-
ENSMUST00000464466.1	Ncstn-219	2812	590aa	ENSMUSP00000242829.1	Nonsense mediated decay		-	-
ENSMUST00000559994.1	Ncstn-234	2781	70aa	ENSMUSP00000338357.1	Nonsense mediated decay		-	-
ENSMUST00000464475.1	Ncstn-228	2778	336aa	ENSMUSP00000242838.1	Nonsense mediated decay		-	-
ENSMUST00000146137.8	Ncstn-206	2777	62aa	ENSMUSP00000120663.2	Nonsense mediated decay		D6RCJ2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000464472.1	Ncstn-225	2760	619aa	ENSMUSP00000242835.1	Nonsense mediated decay		-	-
ENSMUST00000464478.1	Ncstn-231	2666	336aa	ENSMUSP00000242841.1	Nonsense mediated decay		-	-
ENSMUST00000135928.2	Ncstn-203	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000122986.2	Ncstn-202	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000142825.2	Ncstn-205	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,901 bps, Translation length: 708 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P57716

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15507

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000003550.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000003550.11 Ncstn-201

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Transcript: ENSMUST00000003550.11 Ncstn-201

Summary

About Us

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