Transcript: ENSMUST00000002818.9 Ykt6-201

Description

YKT6 v-SNARE homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1927550]

Gene Synonyms

0610042I15Rik, 1810013M05Rik

Location

Chromosome 11: 5,905,693-5,917,780 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 984 variant alleles and maps to 265 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000002741.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002818.9	Ykt6-201	2541	198aa	ENSMUSP00000002818.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24410	Q9CQW1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000449964.1	Ykt6-208	3656	64aa	ENSMUSP00000228327.1	Nonsense mediated decay		-	-
ENSMUST00000449959.1	Ykt6-203	2549	64aa	ENSMUSP00000228322.1	Nonsense mediated decay		-	-
ENSMUST00000449960.1	Ykt6-204	2540	36aa	ENSMUSP00000228323.1	Nonsense mediated decay		-	-
ENSMUST00000449961.1	Ykt6-205	2491	80aa	ENSMUSP00000228324.1	Nonsense mediated decay		-	-
ENSMUST00000449962.1	Ykt6-206	2458	37aa	ENSMUSP00000228325.1	Nonsense mediated decay		-	-
ENSMUST00000449963.1	Ykt6-207	886	53aa	ENSMUSP00000228326.1	Nonsense mediated decay		-	-
ENSMUST00000143834.2	Ykt6-202	791	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,541 bps, Translation length: 198 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CQW1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24410

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000002818.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000002818.9 Ykt6-201

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Transcript: ENSMUST00000002818.9 Ykt6-201

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