Transcript: ENSMUST00000239513.1 Lin54-202

Description

lin-54 DREAM MuvB core complex component [Source:MGI Symbol;Acc:MGI:2140902]

Location

Chromosome 5: 100,589,901-100,646,432 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 3158 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000118665.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239513.1	Lin54-202	4587	749aa	ENSMUSP00000159392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19462	Q571G4-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239512.1	Lin54-201	4451	749aa	ENSMUSP00000159391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19462	Q571G4-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239514.1	Lin54-203	3865	98aa	ENSMUSP00000159393.2	Nonsense mediated decay		A0A7P0A153	-
ENSMUST00000239515.1	Lin54-204	1791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Transcript: ENSMUST00000239513.1 Lin54-202

Protein summary

Protein domains for ENSMUSP00000159392.2

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Transcript: ENSMUST00000239513.1 Lin54-202

Protein summary

Protein domains for ENSMUSP00000159392.2

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