Transcript: ENSMUST00000173348.2 Nkx1-1-201

Description

NK1 homeobox 1 [Source:MGI Symbol;Acc:MGI:109346]

Gene Synonyms

Nkx-1.1, Sax2

Location

Chromosome 5: 33,588,078-33,591,320 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 28 domains and features, is associated with 505 variant alleles and maps to 89 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000029112.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000173348.2	Nkx1-1-201	1209	402aa	ENSMUSP00000133620.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q0Q4F2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Transcript: ENSMUST00000173348.2 Nkx1-1-201

Protein summary

Protein domains for ENSMUSP00000133620.2

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Transcript: ENSMUST00000173348.2 Nkx1-1-201

Protein summary

Protein domains for ENSMUSP00000133620.2

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