Transcript: ENSMUST00000056117.10 Itga2-201

Description

integrin alpha 2 [Source:MGI Symbol;Acc:MGI:96600]

Gene Synonyms

CD49B, DX5, VLA-2 receptor, alpha 2 subunit

Location

Chromosome 13: 114,969,617-115,068,636 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 54 domains and features, is associated with 6506 variant alleles and maps to 328 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000015533.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000056117.10	Itga2-201	7108	1178aa	ENSMUSP00000053891.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26787	Q62469	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224204.2	Itga2-202	480	154aa	ENSMUSP00000153056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCM1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000056117.10 Itga2-201

Protein summary

Protein domains for ENSMUSP00000053891.9

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000056117.10 Itga2-201

Protein summary

Protein domains for ENSMUSP00000053891.9

About Us

Get help

Our sister sites

Follow us