Transcript: ENSMUST00000036424.3 Alox12b-201

Description

arachidonate 12-lipoxygenase, 12R type [Source:MGI Symbol;Acc:MGI:1274782]

Gene Synonyms

12R-LOX, Aloxe2, e-LOX2

Location

Chromosome 11: 69,047,815-69,060,618 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 23 domains and features, is associated with 1393 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000032807.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000036424.3	Alox12b-201	2431	701aa	ENSMUSP00000035250.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24885	O70582 Q2KHL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000464195.1	Alox12b-202	3169	701aa	ENSMUSP00000242558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24885	Q2KHL0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000464196.1	Alox12b-203	2439	346aa	ENSMUSP00000242559.1	Nonsense mediated decay		-	-
ENSMUST00000464197.1	Alox12b-204	2207	51aa	ENSMUSP00000242560.1	Nonsense mediated decay		-	-

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Transcript: ENSMUST00000036424.3 Alox12b-201

Protein summary

Protein domains for ENSMUSP00000035250.3

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Transcript: ENSMUST00000036424.3 Alox12b-201

Protein summary

Protein domains for ENSMUSP00000035250.3

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