Gene: Ptp4a1 ENSMUSG00000117310

Description

protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096]

Gene Synonyms

Prl-1

Location

Chromosome 1: 30,979,383-30,988,851 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 4 transcripts (splice variants), 253 orthologues, 8 paralogues and is associated with 32 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027232.15	Ptp4a1-204	4129	173aa	ENSMUSP00000027232.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14858	B9EKL6 Q63739	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233506.2	Ptp4a1-206	4145	44aa	ENSMUSP00000156424.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W3H6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000076587.6	Ptp4a1-205	2851	43aa	ENSMUSP00000110861.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3F2YNM1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238874.2	Ptp4a1-207	108	35aa	ENSMUSP00000159162.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MQ01	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Gene: Ptp4a1 ENSMUSG00000117310

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Gene: Ptp4a1 ENSMUSG00000117310

Summary

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