Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: A630089N07Rik ENSMUSG00000116673

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Description

RIKEN cDNA A630089N07 gene [Source:MGI Symbol;Acc:MGI:2444323]

Location

Chromosome 16: 97,802,510-97,883,650 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 6 transcripts (splice variants), 119 orthologues and 171 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000231741.3	A630089N07Rik-202	2520	587aa	ENSMUSP00000156068.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6Q3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000231268.2	A630089N07Rik-201	2142	117aa	ENSMUSP00000156011.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6J1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232346.2	A630089N07Rik-203	804	68aa	ENSMUSP00000156036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BXW1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232533.2	A630089N07Rik-205	654	118aa	ENSMUSP00000155945.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6D3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232376.2	A630089N07Rik-204	524	67aa	ENSMUSP00000156146.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6W5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232614.2	A630089N07Rik-206	497	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

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Summary

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